INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON331942 | Stenotrophomonas phage vB_Sm_QDWS359 | 61862 | 67.415 | Stenotrophomonas | Group I | Xooduovirus | Xooduovirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia SM102 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Xooduovirus | Xooduovirus QDWS359 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| ON325435 | Staphylococcus phage CUB-EPI_14 | 46098 | 35.019 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis SE14 | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON324181 | Pseudomonas phage JJ01 | 66346 | 55.655 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus LS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON323491 | Acinetobacter phage vB_AbaS_TCUP2199 | 79572 | 40.386 | Acinetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii TV2199 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON323462 | Klebsiella phage T751 | 157384 | 46.398 | Klebsiella | Group I | Taipeivirus | Taipeivirus | Unclassified | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST258 | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Taipeivirus | Taipeivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON287378 | Dickeya phage DchS19 | 39149 | 51.340 | Dickeya | Group I | Ningirsuvirus | Ningirsuvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Dickeya chrysanthemi | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | Ningirsuvirus | Ningirsuvirus DchS19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON287377 | Serratia phage vB_SmaP-Kaonashi | 41649 | 53.920 | Serratia | Group I | Aghbyvirus | Aghbyvirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens LVF3 | High-quality | High-quality | 99.380 | AAI-based (high-confidence) | Aghbyvirus | Aghbyvirus ISAO8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON287376 | Serratia phage vB_SmaM-Kodama | 275052 | 46.769 | Serratia | Group I | Moabitevirus | Moabitevirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens LVF3 | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | Moabitevirus | Moabitevirus mv2050HW | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON287375 | Serratia phage vB_SmaM-Yubaba | 255663 | 41.045 | Serratia | Group I | Petsuvirus | Petsuvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens LVF3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nimduovirus | Nimduovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON287374 | Serratia phage vB_SmaM-Kashira | 144511 | 50.895 | Serratia | Group I | Vequintavirinae | Unclassified | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens LVF3 | High-quality | High-quality | 97.080 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |