INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ON464761 | Fusobacterium phage JD-Fnp3 | 38962 | 30.265 | Fusobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Fusobacterium nucleatum | High-quality | High-quality | 91.230 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_67 |
| ON464760 | Fusobacterium phage JD-Fnp2 | 41329 | 30.068 | Fusobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Fusobacterium nucleatum | High-quality | High-quality | 96.770 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7;integrase orf_9 |
| ON464759 | Fusobacterium phage JD-Fnp1 | 180066 | 31.513 | Fusobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Fusobacterium nucleatum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON464736 | Vibrio phage ICP3 | 38345 | 42.418 | Vibrio | Group I | Chatterjeevirus | Chatterjeevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 97.230 | AAI-based (high-confidence) | Chatterjeevirus | Chatterjeevirus ICP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON464735 | Vibrio phage ICP3 | 38345 | 42.423 | Vibrio | Group I | Chatterjeevirus | Chatterjeevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 97.230 | AAI-based (high-confidence) | Chatterjeevirus | Chatterjeevirus ICP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON461912 | Salmonella phage PST_H2 | 45455 | 47.729 | Salmonella | Group I | Guangxivirus | Guangxivirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp.; Escherichia coli; Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Guangxivirus | Guangxivirus PSTH2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| ON457559 | Vibrio phage vB_VpaS_CHI | 57805 | 45.870 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus M0904 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON457558 | Vibrio phage vB_VpaS_ALK | 57805 | 45.890 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus M2413 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| ON457557 | Vibrio phage vB_VpaP_M3 | 43446 | 48.787 | Vibrio | Group I | Maculvirus | Maculvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus M2413 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Maculvirus | Maculvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| ON457556 | Vibrio phage vB_VpaP_C2 | 43494 | 48.772 | Vibrio | Group I | Maculvirus | Maculvirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus M2413 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Maculvirus | Maculvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |