INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PX930630	Lactobacillus phage phiZl	29927	41.625	Lactobacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lactobacillus delbrueckii ssp. bulgaricus LBB.B322	High-quality	High-quality	93.600	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_33
PX930629	Lactobacillus phage phiMl	32039	41.543	Lactobacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lactobacillus delbrueckii ssp. bulgaricus LBB.B322	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_20;antirepressor orf_36
PX930442	Ralstonia phage vB_RsoP_HXg1W	40184	62.303	Ralstonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Ralstonia sp.	Complete	High-quality	100.000	DTR (high-confidence)	Serkorvirus	Serkorvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX930198	Salmonella phage GSP028	111691	40.049	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis SE006	Complete	High-quality	100.000	DTR (high-confidence)	Epseptimavirus	Epseptimavirus ende	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX930192	Escherichia phage Doce	89002	38.906	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli K-12	High-quality	High-quality	100.000	AAI-based (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX929376	Salmonella phage PSA5-1	158395	36.973	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella sp. S12	High-quality	High-quality	94.180	AAI-based (high-confidence)	Gelderlandvirus	Gelderlandvirus melville	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX922076	Escherichia phage ThamKa	135886	43.504	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli DH5alpha	High-quality	High-quality	96.870	AAI-based (high-confidence)	Vequintavirus	Vequintavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX915679	Salmonella phage GSP002	86179	38.679	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis SE006	Complete	High-quality	100.000	DTR (high-confidence)	Felixounavirus	Felixounavirus D12	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX915678	Escherichia phage vB_EcoM_PhiSG_Ec1	165848	35.535	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli MCC2246	High-quality	High-quality	98.540	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus pss1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX915677	Escherichia phage vB_EcoP_PhiSG_Ec2	78652	41.994	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli MCC2552	Complete	High-quality	100.000	DTR (high-confidence)	Kuravirus	Kuravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic