Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
OP009268Rhodobacter phage RcCWillis6880461.193RhodobacterGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodobacter capsulatus YW1CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_24
OP009267Rhodobacter phage RcBigEagle6813860.178RhodobacterGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodobacter capsulatus YW1High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OP009266Rhodobacter phage RcAquaphina6897259.865RhodobacterGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodobacter capsulatus YW1High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_20
OP009265Rhodobacter phage RcAqua6647260.161RhodobacterGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Rhodobacter capsulatus YW1High-qualityHigh-quality97.670AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OP004060Fusobacterium phage TCUFN613151525.595FusobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Fusobacterium nucleatumHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_75
ON996340Xanthomonas phage BsXeu269p/34628062.960XanthomonasGroup I BeograduvirusBeograduvirusKantovirinaeAnamaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas euvesicatoriaHigh-qualityHigh-quality98.450AAI-based (high-confidence) BeograduvirusBeograduvirus BsXeuCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
ON996339Salmonella phage T1024194149.713SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar Typhimurium ATCC 14028High-qualityHigh-quality97.940AAI-based (high-confidence) JerseyvirusJerseyvirus T102Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
ON995367Pectobacterium phage vB_PcaP_P15_PC2B63970147.928PectobacteriumGroup I UnyawovirusUnyawovirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pectobacterium carotovorum C2B6High-qualityHigh-quality99.250AAI-based (high-confidence) UnyawovirusUnyawovirus PC2B6Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
ON989481Staphylococcus phage phiSa2wa-st5.24481133.449StaphylococcusGroup I TriavirusTriavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusHigh-qualityHigh-quality96.170AAI-based (high-confidence) TriavirusTriavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_40
ON981384Synechococcus phage MinM14275672.647SynechococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Synechococcus sp.Medium-qualityGenome-fragment88.220AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_52
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