INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP039102 | Staphylococcus phage LJT-1 | 143914 | 30.195 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP038547 | Salmonella phage GRNsp03 | 43596 | 47.589 | Salmonella | Group I | Zindervirus | Zindervirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis GXC190301 | High-quality | High-quality | 97.820 | AAI-based (high-confidence) | Zindervirus | Zindervirus BP12B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP038320 | Staphylococcus phage phiSa2wa-st5.6 | 44139 | 33.218 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 16986 genotype ST5-MRSA-IV | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;antirepressor orf_11;integrase orf_41 |
| OP038319 | Staphylococcus phage phiSa2wa-st5.4 | 44811 | 33.449 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus strain CRGH 26 genotype ST5-MRSA-IV | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_40 |
| OP038318 | Staphylococcus phage phiSa2wa-st5.3 | 44811 | 33.449 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus RPAH47 genotype ST5-MRSA-IV | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_40 |
| OP028995 | Microcystis phage Mae-Yong1326-1 | 48822 | 71.802 | Microcystis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB-1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_12 |
| OP022426 | Clostridium phage vB_CpeP_PM11 | 17894 | 28.166 | Clostridium | Group I | Gregsiragusavirus | Gregsiragusavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 96.790 | AAI-based (high-confidence) | Gregsiragusavirus | Gregsiragusavirus pm11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP021684 | Mycobacterium phage YemiJoy2021 | 155660 | 64.724 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.570 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus quasimodo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP021683 | Microbacterium phage Figueroism | 41847 | 63.450 | Microbacterium | Group I | Ilzatvirus | Ilzatvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ilzatvirus | Ilzatvirus teagan | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP021682 | Mycobacterium phage IkeLoa | 155280 | 64.700 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.340 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |