INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP136151 | Escherichia phage Pondi | 60610 | 52.859 | Escherichia | Group I | Xuquatrovirus | Xuquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Xuquatrovirus | Xuquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP136135 | Staphylococcus phage Sa2wa-st573 | 42403 | 33.443 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 16985 ST573-MRSA-V | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P1105 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;cro orf_8;antirepressor orf_9;integrase orf_40 |
| OP136134 | Staphylococcus phage Sa2wa-st88 | 45346 | 33.176 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 17188 ST88-MRSA-IV | High-quality | High-quality | 97.700 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_30 |
| OP136133 | Staphylococcus phage phiSa2wa-st30.2 | 41346 | 33.897 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 19152 ST30-MRSA-IV | High-quality | High-quality | 97.440 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_11;integrase orf_36 |
| OP136132 | Staphylococcus phage phiSa2wa-st6 | 45270 | 33.234 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 19202 ST6-MRSA-IV | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus st78 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;integrase orf_30 |
| OP136131 | Staphylococcus phage phiSa2wa-st5.7 | 47013 | 33.206 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 15129 ST5-MRSA-IV | Complete | High-quality | 100.000 | DTR (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;antirepressor orf_8;integrase orf_32 |
| OP132241 | Salmonella phage SE-SHZ-R | 53028 | 45.864 | Salmonella | Group I | Rosemountvirus | Rosemountvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis ATCC 13076 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rosemountvirus | Rosemountvirus birk | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP131590 | Acidovorax phage Alfacinha1 | 39879 | 65.162 | Acidovorax | Group I | Peduoviridae | Unclassified | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acidovorax valerianellae GBBC 3357 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_55 |
| OP131589 | Acidovorax phage Aval | 39584 | 66.090 | Acidovorax | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acidovorax valerianellae GBBC 3043 | High-quality | High-quality | 93.720 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| OP131588 | Acidovorax phage Acica | 37472 | 67.522 | Acidovorax | Group I | Peduoviridae | Unclassified | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acidovorax cattleyae GBBC 1148 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_41;integrase orf_49;integrase orf_51 |