INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP172773 | Clostridium phage CS229P2 | 16220 | 37.386 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_Q symbiosum DA229 | Medium-quality | Genome-fragment | 79.620 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172772 | Clostridium phage CS229P1 | 16473 | 37.832 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_Q symbiosum DA229 | Medium-quality | Genome-fragment | 80.870 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172771 | Clostridium phage CI644P6 | 15412 | 33.454 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Medium-quality | Genome-fragment | 51.330 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172770 | Clostridium phage CI644P5 | 15443 | 33.595 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Medium-quality | Genome-fragment | 51.430 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172769 | Clostridium phage CI644P4 | 15401 | 33.400 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Medium-quality | Genome-fragment | 51.290 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172768 | Clostridium phage CI644P3 | 15466 | 33.564 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Medium-quality | Genome-fragment | 51.510 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172767 | Clostridium phage CI644P2 | 14620 | 34.049 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Low-quality | Genome-fragment | 48.690 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172766 | Clostridium phage CI644P1 | 15557 | 33.438 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ innocuum DA664 | Medium-quality | Genome-fragment | 51.810 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172765 | Clostridium phage CI461P3 | 14767 | 39.710 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ sp003481775 DA461 | Low-quality | Genome-fragment | 48.930 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP172764 | Clostridium phage CI461P2 | 14767 | 39.703 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium_AQ sp003481775 DA461 | Low-quality | Genome-fragment | 48.930 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic |