INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP172793 | Enterococcus phage EF36P1 | 39968 | 34.795 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus_D gallinarum DO36 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| OP172792 | Escherichia phage ECO340P2 | 151993 | 38.902 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri DA340 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phapecoctavirus | Phapecoctavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172791 | Escherichia phage ECO340P1 | 151113 | 39.026 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri DA340 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phapecoctavirus | Phapecoctavirus Mt1B1P17 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172790 | Escherichia phage ECO319P1 | 75333 | 44.266 | Escherichia | Group I | Crifsvirus | Crifsvirus | Unclassified | Grimontviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri DA319 | Complete | High-quality | 100.000 | DTR (high-confidence) | Crifsvirus | Crifsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172789 | Escherichia phage ECO71P1 | 68152 | 46.189 | Escherichia | Group I | Wifcevirus | Wifcevirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri DO71 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wifcevirus | Wifcevirus ECO71P1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172788 | Escherichia phage ECO07P5 | 167563 | 35.383 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia fergusonii DO07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus zeen18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172787 | Escherichia phage ECO07P4 | 167075 | 35.408 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia fergusonii DO07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus zeen18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172786 | Escherichia phage ECO07P3 | 166565 | 35.593 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia fergusonii DO07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172785 | Escherichia phage ECO07P2 | 166091 | 35.532 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia fergusonii DO07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP172784 | Escherichia phage ECO07P1 | 165792 | 35.657 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia fergusonii DO07 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |