INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP209177 | Bacteriophage N55_L8635_C17.5 | 8038 | 37.684 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | bacterium | Low-quality | Genome-fragment | 11.410 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP209176 | Bacteriophage N118_L5885_C67.5 | 5893 | 36.077 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | bacterium | Medium-quality | Genome-fragment | 87.220 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP209175 | Bacteriophage N127_L5035_C77.3 | 4990 | 48.517 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | bacterium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OP209174 | Bacteriophage N88_L5317_C7.5 | 5227 | 46.336 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | bacterium | High-quality | High-quality | 98.360 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP204508 | Bacillus phage JBA3 | 18752 | 39.910 | Bacillus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Bacillus amyloliquefaciens KACC 15818 | High-quality | High-quality | 95.760 | AAI-based (high-confidence) | Salasvirus | Salasvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP197928 | Shigella phage A2 | 167011 | 35.589 | Shigella | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri 2a | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP186293 | Rhodobacter phage RcXuper | 147673 | 61.865 | Rhodobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodobacter capsulatus YW1 | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_49 |
| OP185508 | Salmonella phage JSS1 | 40070 | 48.715 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Cerro 87 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus JSS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP185507 | Salmonella phage JSS2 | 39065 | 49.397 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Cerro 87 | High-quality | High-quality | 97.770 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus JSS2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP177727 | Escherichia phage pEC-M2929-1AR.1 | 145425 | 37.465 | Escherichia | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli M2929-1AR | Complete | High-quality | 100.000 | DTR (high-confidence) | Justusliebigvirus | Justusliebigvirus PHB05 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |