Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX979745Klebsiella phage vB_KpaP_1-84455553.812KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) DrulisvirusDrulisvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX979744Klebsiella phage vB_KpaP_0.5-64404553.906KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) DrulisvirusDrulisvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX979742Vibrio phage vB_ValP_PA56-25028241.265VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio alginolyticusMedium-qualityGenome-fragment57.940AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX979741Vibrio phage vB_ValP_PA56-15021641.493VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio alginolyticusMedium-qualityGenome-fragment57.330AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX974351Staphylococcus phage vB_SauL_SHZU014436433.604StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus aureusHigh-qualityHigh-quality95.510AAI-based (high-confidence) TriavirusTriavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_10;integrase orf_41;cro orf_45
PX974340Bacillus phage GH_012567930.422BacillusGroup I ClaudivirusClaudivirusNorthropvirinaeSalasmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus cereus ATCC 10876High-qualityHigh-quality98.170AAI-based (high-confidence) ClaudivirusClaudivirus Goe4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX974333Klebsiella phage CP-p-KP-232324899050.782KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality98.880AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX974332Klebsiella phage CP-p-KP-221854853150.353KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality97.960AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX974331Klebsiella phage vB_KpnP_ZCKP104084953.059KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella sp.High-qualityHigh-quality100.000AAI-based (high-confidence) PrzondovirusPrzondovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX974330Listeria phage MET-P1-7454235536.272ListeriaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Listeria monocytogenes serotype 1/2cHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_11
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