INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP380269 | Pseudomonas phage phiH1 | 57600 | 66.023 | Pseudomonas | Group I | Pamexvirus | Pamexvirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pamexvirus | Pamexvirus phiH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP377721 | Salmonella phage BIS08P22 | 41574 | 47.402 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_24;cro orf_25;integrase orf_65 |
| OP375635 | Vibrio phage vB_VaS_L1 | 39810 | 43.615 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP374156 | Staphylococcus phage phiSa2wa-st5.9 | 44811 | 33.454 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 1577,AK3(NZ) ST5-MRSA-IV | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_8;antirepressor orf_10;integrase orf_41 |
| OP374155 | Staphylococcus phage phiSa2wa-st5.8 | 44811 | 33.454 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 1659 ST5-MRSA-IV | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_8;antirepressor orf_10;integrase orf_41 |
| OP374154 | Staphylococcus phage phiSa2wa-st5.5 | 44811 | 33.449 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 389 ST5-MRSA-IV | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Triavirus | Triavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_7;antirepressor orf_9;integrase orf_40 |
| OP374082 | Haloarchaeal virus HJTV-4 | 46173 | 62.697 | Haloarchaeal | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Natrinema thermotolerans A29 | High-quality | High-quality | 99.350 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP374081 | Haloterrigena jeotgali icosahedral virus 1 | 17198 | 64.002 | Haloterrigena | Group I | Yingchengvirus | Yingchengvirus | Unclassified | Simuloviridae | Halopanivirales | Laserviricetes | Dividoviricota | Helvetiavirae | Singelaviria | Natrinema thermotolerans A29 | High-quality | High-quality | 96.700 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP373729 | Klebsiella phage vB_Kpn_ZCKp20p | 48797 | 47.907 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| OP361299 | Pseudomonas phage phiH2 | 57666 | 66.230 | Pseudomonas | Group I | Pamexvirus | Pamexvirus | Bradleyvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. PA14 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pamexvirus | Pamexvirus phiH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |