INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP503995 | Paenibacillus phage vB_PlaS-5/A | 41111 | 41.510 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_32;antirepressor orf_36;antirepressor orf_40;integrase orf_60 |
| OP503994 | Paenibacillus phage vB_PlaS-3/A | 41209 | 41.552 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_33;antirepressor orf_37;antirepressor orf_41;integrase orf_60 |
| OP503993 | Paenibacillus phage vB_PlaS-2/A | 41177 | 41.547 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_33;antirepressor orf_37;antirepressor orf_41;integrase orf_60 |
| OP503992 | Paenibacillus phage vB_PlaS-1/A | 41052 | 41.523 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus shelly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_34;antirepressor orf_38;antirepressor orf_42;integrase orf_62 |
| OP503991 | Paenibacillus phage Lilo | 40941 | 40.326 | Paenibacillus | Group I | Harrisonvirus | Harrisonvirus | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae F1A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_31 |
| OP503990 | Paenibacillus phage Dash | 44599 | 39.389 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae 2006 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_26;integrase orf_33;antirepressor orf_42 |
| OP503989 | Paenibacillus phage Callan | 44768 | 39.687 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae 2006 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_26;integrase orf_33;antirepressor orf_42 |
| OP503988 | Paenibacillus phage WildCape | 44430 | 42.982 | Paenibacillus | Group I | Gochnauervirinae | Unclassified | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae F1A | Medium-quality | Genome-fragment | 76.420 | HMM-based (lower-bound) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_30;antirepressor orf_34 |
| OP503987 | Paenibacillus phage UtuhinaGold_Zacery | 44420 | 42.972 | Paenibacillus | Group I | Gochnauervirinae | Unclassified | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae 2017 | Medium-quality | Genome-fragment | 76.400 | HMM-based (lower-bound) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_30;antirepressor orf_34 |
| OP503986 | Paenibacillus phage TonyLawson77 | 44420 | 42.963 | Paenibacillus | Group I | Gochnauervirinae | Unclassified | Gochnauervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae F1A | Medium-quality | Genome-fragment | 76.400 | HMM-based (lower-bound) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_30;antirepressor orf_34 |