INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP869854	Lacticaseibacillus phage R26.26	16938	43.311	Lacticaseibacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lacticaseibacillus rhamnosus LMG 23551	Low-quality	Genome-fragment	40.930	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_34
OP869853	Lacticaseibacillus phage R26.14	11745	42.997	Lacticaseibacillus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Lacticaseibacillus rhamnosus LMG 23551	Low-quality	Genome-fragment	28.400	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1;antirepressor orf_7
OP869852	Lacticaseibacillus phage R26.9	13665	46.118	Lacticaseibacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23551	Low-quality	Genome-fragment	34.360	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
OP869851	Lacticaseibacillus phage R26.1	15427	44.584	Lacticaseibacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23551	Low-quality	Genome-fragment	36.720	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
OP869850	Lacticaseibacillus phage R24.2	42770	44.702	Lacticaseibacillus	Group I	Pleetrevirus	Pleetrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23327	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_30;integrase orf_48
OP869849	Lacticaseibacillus phage R24.1	40600	44.308	Lacticaseibacillus	Group I	Sukhumvitvirus	Sukhumvitvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23327	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_34;cro orf_35;integrase orf_38;integrase orf_41
OP869848	Lacticaseibacillus phage R23.9	41598	45.182	Lacticaseibacillus	Group I	Junavirus	Junavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23277	High-quality	High-quality	99.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_22
OP869847	Lacticaseibacillus phage R23.1	14518	43.635	Lacticaseibacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 23277	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OP869846	Lacticaseibacillus phage R18.1	41877	44.487	Lacticaseibacillus	Group I	Junavirus	Junavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 19717	High-quality	High-quality	99.560	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_22;antirepressor orf_30
OP869845	Lacticaseibacillus phage R10.1	37715	45.101	Lacticaseibacillus	Group I	Pleetrevirus	Pleetrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lacticaseibacillus rhamnosus LMG 25881	High-quality	High-quality	90.930	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_37