INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP902295 | Citrobacter phage BSwM KMM2 | 88537 | 38.955 | Citrobacter | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii ZY198 | Complete | High-quality | 100.000 | DTR (high-confidence) | Mooglevirus | Mooglevirus KMM2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP902294 | Staphylococcus phage BSwM-KMM1 | 137386 | 31.342 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus LKY-Strp01 | High-quality | High-quality | 97.070 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP902293 | Citrobacter phage BSwM KMM4 | 86911 | 39.005 | Citrobacter | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter sp. TSA-1 | High-quality | High-quality | 98.660 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus KMM4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP902292 | Citrobacter phage BSwS KMM3 | 49164 | 42.893 | Citrobacter | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter sp. TSA-1 | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_19 |
| OP894077 | Listeria phage HS5 | 39936 | 36.313 | Listeria | Group I | Aquingentivirus | Aquingentivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | Aquingentivirus | Aquingentivirus HS5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_36;antirepressor orf_45 |
| OP894055 | Susfortunavirus gdyzp5 | 18888 | 28.801 | Unspecified | Group I | Susfortunavirus | Susfortunavirus | Unclassified | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | Complete | High-quality | 100.000 | ITR (high-confidence) | Susfortunavirus | Susfortunavirus gdyzp5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP889247 | Aeromonas phage AVP1 | 234448 | 38.149 | Aeromonas | Group I | Ferozepurvirus | Ferozepurvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas veronii | High-quality | High-quality | 98.680 | AAI-based (high-confidence) | Ferozepurvirus | Ferozepurvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP889240 | Enterococcus phage vB_EfaS_Ef6.1 | 41871 | 34.618 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | Complete | High-quality | 100.000 | DTR (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP883945 | Stenotrophomonas phage CM1 | 319518 | 43.884 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia SRM01 | High-quality | High-quality | 92.050 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP882271 | Pseudomonas phage MiCath | 60958 | 55.745 | Pseudomonas | Group I | Micathvirus | Micathvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida S12 | High-quality | High-quality | 94.040 | AAI-based (high-confidence) | Micathvirus | Micathvirus micath | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |