INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ291020 | Salmonella phage Kenya-K2 | 43066 | 49.914 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ269668 | Caulobacter phage TMCBR2 | 42838 | 66.084 | Caulobacter | Group I | Kronosvirus | Kronosvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter segnis CBR1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kronosvirus | Kronosvirus pomeria | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ269649 | Enterococcus phage DEfc27b | 41054 | 34.703 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus LY0322 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ268095 | Riemerella phage vB_RanS_CRP5 | 46710 | 35.185 | Riemerella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Riemerella anatipestifer RAf2 | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_19;antirepressor orf_44 |
| OQ267696 | Vibrio phage VPHZ6 | 37871 | 52.050 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus ATCC 17802 | Complete | High-quality | 100.000 | DTR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OQ267695 | Salmonella phage Pu29 | 45715 | 46.077 | Salmonella | Group I | Skatevirus | Skatevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium ATCC 14028 | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | Skatevirus | Skatevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ267593 | Klebsiella phage phi_KPN_H2 | 60324 | 45.620 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Carvajevirus | Carvajevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ267592 | Klebsiella phage phi_KPN_HS3 | 49111 | 50.966 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus KPNHS3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ267591 | Klebsiella phage phi_KPN_S3 | 176202 | 41.875 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.900 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus kp15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ259603 | Pseudomonas phage UF_RH1 | 42567 | 53.591 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | Septimatrevirus | Septimatrevirus UFRH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |