INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ680630 | Vibrio phage PG288 | 76120 | 48.826 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio parahaemolyticus G855 | Complete | High-quality | 100.000 | DTR (high-confidence) | Mardecavirus | Mardecavirus SSP002 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ680521 | Aeromonas phage P05B | 32302 | 59.173 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas hydrophila | High-quality | High-quality | 95.050 | AAI-based (high-confidence) | Bielevirus | Bielevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_16 |
| OQ680481 | Salmonella phage phC17 | 106649 | 38.912 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus phC17 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ680480 | Salmonella phage phC11 | 107372 | 38.945 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus phA11 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ680479 | Salmonella phage phB7 | 106455 | 39.477 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | High-quality | High-quality | 94.260 | AAI-based (high-confidence) | Tequintavirus | Tequintavirus phB7 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ680478 | Salmonella phage phA11 | 105369 | 38.955 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus phA11 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ680139 | Escherichia phage PH1062 | 49857 | 46.996 | Escherichia | Group I | Nouzillyvirus | Nouzillyvirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| OQ680138 | Escherichia phage PH1061 | 39968 | 49.735 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus PH1061 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ676962 | Xanthomonas phage NEB7 | 45241 | 62.892 | Xanthomonas | Group I | Xanthovirus | Xanthovirus | Kantovirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas sp. | High-quality | High-quality | 97.750 | AAI-based (high-confidence) | Xanthovirus | Xanthovirus neb7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ674210 | Burkholderia phage vB_Bco-CSP1 | 14942 | 48.374 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia contaminans 5080 | Complete | High-quality | 100.000 | ITR (high-confidence) | Alphatectivirus | Alphatectivirus PRD1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |