INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OQ818699 | Erwinia phage Mauresque | 54190 | 44.401 | Erwinia | Group I | Loessnervirus | Loessnervirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Loessnervirus | Loessnervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818698 | Erwinia phage Fougasse | 54213 | 44.401 | Erwinia | Group I | Loessnervirus | Loessnervirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Loessnervirus | Loessnervirus fougasse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818697 | Erwinia phage Farigoule | 53820 | 44.292 | Erwinia | Group I | Loessnervirus | Loessnervirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Loessnervirus | Loessnervirus fougasse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818696 | Erwinia phage Calisson | 54556 | 44.360 | Erwinia | Group I | Loessnervirus | Loessnervirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Loessnervirus | Loessnervirus fougasse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818695 | Erwinia phage Berlingot | 53494 | 44.435 | Erwinia | Group I | Loessnervirus | Loessnervirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Loessnervirus | Loessnervirus fougasse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818694 | Erwinia phage Aioli | 53903 | 44.011 | Erwinia | Group I | Fifivirus | Fifivirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | Complete | High-quality | 100.000 | DTR (high-confidence) | Fifivirus | Fifivirus aioli | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ818670 | Salmonella phage SWJM-03 | 39474 | 48.971 | Salmonella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium 2112 | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus SWJM03 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ817854 | Escherichia phage C1-RQL | 51544 | 43.990 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli JS682 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hanrivervirus | Hanrivervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OQ817844 | Achromobacter phage SE2 | 45648 | 55.882 | Achromobacter | Group I | Steinhofvirus | Steinhofvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter sp. | Medium-quality | Genome-fragment | 86.680 | AAI-based (high-confidence) | Steinhofvirus | Steinhofvirus SE2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OQ817843 | Achromobacter phage hasilly_LB3 | 46478 | 55.773 | Achromobacter | Group I | Steinhofvirus | Steinhofvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter sp. | Medium-quality | Genome-fragment | 86.760 | AAI-based (high-confidence) | Nyaakvirus | Nyaakvirus nyaak | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |