INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ992205	Pseudomonas phage vB_PaeP_YL2	72060	54.899	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	98.940	AAI-based (high-confidence)	Litunavirus	Litunavirus pavob	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ992204	Pseudomonas phage vB_PaeP_YL1	72187	54.902	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	Complete	High-quality	100.000	DTR (high-confidence)	Litunavirus	Litunavirus pavob	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ990040	Escherichia phage SUT_E520	102434	38.131	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OQ990039	Escherichia phage SUT_E420	104819	38.076	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OQ988004	Mycobacteroides phage 8UZL	47806	58.675	Mycobacteroides	Group I	Mapvirus	Mapvirus	Alphabravovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacteroides abscessus	High-quality	High-quality	99.120	AAI-based (high-confidence)	Mapvirus	Mapvirus Ff47	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ985197	Mycobacterium phage KanikaMF1	47372	67.223	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycolicobacterium smegmatis mc^2 155	High-quality	High-quality	96.680	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_31;antirepressor orf_34;integrase orf_52
OQ985170	Lactococcus phage STA254	21643	35.582	Lactococcus	Group I	Ceduovirus	Ceduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis PEN82	High-quality	High-quality	98.780	AAI-based (high-confidence)	Ceduovirus	Ceduovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ985169	Lactococcus phage STA251	21643	35.582	Lactococcus	Group I	Ceduovirus	Ceduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis PEN82	High-quality	High-quality	98.770	AAI-based (high-confidence)	Ceduovirus	Ceduovirus bIBBp64	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ985168	Lactococcus phage STA206	22005	35.446	Lactococcus	Group I	Ceduovirus	Ceduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis PEN72	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ceduovirus	Ceduovirus bIBBp64	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ985167	Lactococcus phage STA189	21570	35.508	Lactococcus	Group I	Ceduovirus	Ceduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis PEN82	High-quality	High-quality	98.410	AAI-based (high-confidence)	Ceduovirus	Ceduovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic