INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR088597	Listeria phage cka15	137077	35.869	Listeria	Group I	Pecentumvirus	Pecentumvirus	Jasinskavirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	Complete	High-quality	100.000	DTR (high-confidence)	Pecentumvirus	Pecentumvirus AG20	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR083247	Escherichia phage Bf23	114544	39.228	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BW25113 strain K-12	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR083034	Microcystis phage Mwe-Yong1318-1	43641	60.858	Microcystis	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unspecified	Medium-quality	Genome-fragment	50.570	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_63
OR075999	Pseudomonas phage vB3530	66392	55.651	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus LS1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR075997	Synechococcus phage Sc-Yong805-2	41164	55.320	Synechococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Synechococcus elongatus PCC 7942 = FACHB-805	Medium-quality	Genome-fragment	50.860	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_35
OR075895	Acinetobacter phage vB_Ab4_Hep4-M	41462	39.301	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii 4 (Ab4)	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus Hep4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR067838	Escherichia phage KKP 3954	149856	39.059	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli strain KKP 3691	Complete	High-quality	100.000	DTR (high-confidence)	Phapecoctavirus	Phapecoctavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR067837	Salmonella phage KKP 3953	115522	39.900	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serowar 6,8:1,v:- strain KKP 1008	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR067836	Serratia phage KKP 3708	40461	52.873	Serratia	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia liquefaciens strain KKP 3654	High-quality	High-quality	100.000	AAI-based (high-confidence)	Przondovirus	Przondovirus KKP3708	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR067835	Salmonella phage KKP 3828	43099	51.962	Salmonella	Group I	Koutsourovirus	Koutsourovirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serowar 6,8:1,v:- strain KKP 1008	High-quality	High-quality	98.300	AAI-based (high-confidence)	Koutsourovirus	Koutsourovirus KKP3828	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic