INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR234023	Klebsiella phage KpF2	174940	41.866	Klebsiella	Group I	Slopekvirus	Slopekvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	98.190	AAI-based (high-confidence)	Slopekvirus	Slopekvirus matisse	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR234014	Staphylococcus phage SAC	136673	30.024	Staphylococcus	Group I	Silviavirus	Silviavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus CCARM 3089	Complete	High-quality	100.000	DTR (high-confidence)	Silviavirus	Silviavirus SA11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_15
OR234010	Listeria phage LP-LmcIH1-9	38916	35.854	Listeria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_29;antirepressor orf_41
OR234009	Listeria phage LP-LmcIH1-8	39150	35.854	Listeria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_28;antirepressor orf_40
OR233736	Vibrio phage 4141	38498	42.800	Vibrio	Group I	Chatterjeevirus	Chatterjeevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cholerae	High-quality	High-quality	97.250	AAI-based (high-confidence)	Chatterjeevirus	Chatterjeevirus N4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR233735	Salmonella phage SB5	59645	56.576	Salmonella	Group I	Chivirus	Chivirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhi	High-quality	High-quality	92.220	AAI-based (high-confidence)	Chivirus	Chivirus ER24	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_59
OR231920	Klebsiella phage pzk-kv6-1	167255	39.597	Klebsiella	Group I	Jiaodavirus	Jiaodavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella variicola kv6	High-quality	High-quality	99.040	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR231919	Klebsiella phage pzk-kv23	112468	45.405	Klebsiella	Group I	Sugarlandvirus	Sugarlandvirus	Unclassified	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella variicola kv23	High-quality	High-quality	98.840	AAI-based (high-confidence)	Sugarlandvirus	Sugarlandvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR231918	Klebsiella phage pzk-kv19	167127	39.612	Klebsiella	Group I	Jiaodavirus	Jiaodavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella variicola kv19	High-quality	High-quality	99.040	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR231917	Klebsiella phage pzk-kv8	174824	40.652	Klebsiella	Group I	Marfavirus	Marfavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella variicola kv8	High-quality	High-quality	100.000	AAI-based (high-confidence)	Marfavirus	Marfavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic