INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR255951	Pseudomonas aeruginosa phage L13	66147	55.271	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pbunavirus	Pbunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR253920	Mycobacterium phage Spino	51372	63.932	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus peaches	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
OR253919	Microbacterium phage Wayne3	62371	66.983	Microbacterium	Group I	Squashvirus	Squashvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	Complete	High-quality	100.000	DTR (high-confidence)	Squashvirus	Squashvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR253918	Gordonia phage Nibbles	45601	61.663	Gordonia	Group I	Aziravirus	Aziravirus	Ceeteevirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	98.300	AAI-based (high-confidence)	Aziravirus	Aziravirus nibbles	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR253917	Mycobacterium Phage TiniBug	60301	66.117	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.530	AAI-based (high-confidence)	Anayavirus	Anayavirus urkel	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43
OR253916	Mycobacterium phage Auspice	81421	61.571	Mycobacterium	Group I	Bongovirus	Bongovirus	Mclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.610	AAI-based (high-confidence)	Bongovirus	Bongovirus bongo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_105
OR253915	Microbacterium phage Lonelysoil	61378	66.943	Microbacterium	Group I	Squashvirus	Squashvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	Complete	High-quality	100.000	DTR (high-confidence)	Squashvirus	Squashvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR253914	Microbacterium phage Morrigan	40509	62.843	Microbacterium	Group I	Neferthenavirus	Neferthenavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.600	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OR253913	Streptomyces phage Dennebes	46162	60.431	Streptomyces	Group I	Flowerpowervirus	Flowerpowervirus	Beephvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces mirabilis NRRL B-2400	Complete	High-quality	100.000	DTR (high-confidence)	Flowerpowervirus	Flowerpowervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR253912	Gordonia phage MossRose	61072	69.035	Gordonia	Group I	Mossrosevirus	Mossrosevirus	Durvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	99.860	AAI-based (high-confidence)	Mossrosevirus	Mossrosevirus mossrose	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic