INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR283207 | Microbacterium phage Chatham | 17362 | 68.512 | Microbacterium | Group I | Paopuvirus | Paopuvirus | Pelczarvirinae | Orlajensenviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Paopuvirus | Paopuvirus paopu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR283206 | Gordonia phage MoontowerMania | 59932 | 67.572 | Gordonia | Group I | Kroosvirus | Kroosvirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae CAG3 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vividuovirus | Vividuovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR271596 | Klebsiella phage ValerieMcCarty04 | 166087 | 39.595 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca clinical isolate | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR263580 | Streptomyces phage Samy | 61068 | 66.527 | Streptomyces | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR261032 | Aeromonas phage ST4 | 90646 | 60.543 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 97.780 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_50 |
| OR261031 | Aeromonas phage ST21 | 42593 | 58.641 | Aeromonas | Group I | Ahphunavirus | Ahphunavirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ahphunavirus | Ahphunavirus ST21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR260414 | Salmonella phage PSH-1 | 48466 | 45.327 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skatevirus | Skatevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OR260090 | Caulobacter phage Quill_5.2 | 44641 | 54.779 | Caulobacter | Group I | Lullwatervirus | Lullwatervirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides CB15 | Complete | High-quality | 100.000 | DTR (high-confidence) | Lullwatervirus | Lullwatervirus quill52 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR260089 | Caulobacter phage GB2A | 61990 | 63.696 | Caulobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides CB15 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR259390 | Staphylococcus phage vB_SauP_ASUmrsa123 | 17155 | 29.123 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus MRSABR1 | High-quality | High-quality | 96.990 | AAI-based (medium-confidence) | Rosenblumvirus | Rosenblumvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |