INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR296438	Bacteroides phage C2_18_80S2P	33770	45.845	Bacteroides	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacteroides uniformis MB18-80	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OR296437	Bacteroides phage C1_85S2P	44391	44.635	Bacteroides	Group I	Rodicavirus	Rodicavirus	Dravavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacteroides uniformis MB20-85	High-quality	High-quality	98.000	AAI-based (high-confidence)	Rodicavirus	Rodicavirus C185S2P	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR296322	Klebsiella phage H5	39477	53.246	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus H5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR296290	Escherichia phage SDYTW1-F1-2-2_3	74752	42.068	Escherichia	Group I	Kuravirus	Kuravirus	Gordonclarkvirinae	Mtkvariviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	98.080	AAI-based (high-confidence)	Kuravirus	Kuravirus SDYTW1F1223	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR295917	Corynebacterium phage CSP1	39752	58.480	Corynebacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Corynebacterium striatum F9-2	High-quality	High-quality	98.320	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_1
OR295560	Clostridioides phage phiCD508	49272	29.124	Clostridioides	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridioides difficile LCUS 0508	Complete	High-quality	100.000	DTR (high-confidence)	Colneyvirus	Colneyvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_8;antirepressor orf_15;antirepressor orf_40
OR290970	Klebsiella phage SAKp02	59343	56.106	Klebsiella	Group I	Yonseivirus	Yonseivirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae B3768	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yonseivirus	Yonseivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR290821	Klebsiella phage PCCM_KpP1172	40222	53.013	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR290783	Salmonella phage PRF-SP6	39966	50.275	Salmonella	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Paratyphi B	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus PRFSP1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR290782	Salmonella phage PRF-SP8	39857	50.305	Salmonella	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Paratyphi C	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus PRFSP1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic