INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR397124 | Clostridioides phage AR1086-1 | 130030 | 26.323 | Clostridioides | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridioides difficile | High-quality | High-quality | 98.050 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_55;antirepressor orf_137 |
| OR397123 | Clostridioides phage AR1074-1 | 38059 | 29.071 | Clostridioides | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridioides difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | parA orf_11;integrase orf_44 |
| OR396896 | Achromobacter phage tuull | 47460 | 52.975 | Achromobacter | Group I | Nyaakvirus | Nyaakvirus | Alvaradovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter ruhlandii | Medium-quality | Genome-fragment | 89.390 | AAI-based (high-confidence) | Nyaakvirus | Nyaakvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OR395405 | Desulfovibrio phage 7757 | 142573 | 44.290 | Desulfovibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Desulfovibrio vulgaris ATCC 7757 | Medium-quality | Genome-fragment | 80.430 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR387886 | Klebsiella phage P55 | 40301 | 53.177 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 2092 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Przondovirus | Przondovirus P55 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR387861 | Streptococcus phage vb_Spy_7 | 35679 | 54.878 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes 9 | High-quality | High-quality | 94.130 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR387547 | Klebsiella phage P06 | 40632 | 52.734 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus pv150004 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR387546 | Klebsiella phage P01 | 158784 | 46.264 | Klebsiella | Group I | Taipeivirus | Taipeivirus | Unclassified | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Taipeivirus | Taipeivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR387121 | Mycolicibacterium phage WillG | 10866 | 63.528 | Mycolicibacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicibacterium aichiense | Low-quality | Genome-fragment | 20.860 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6 |
| OR387120 | Mycolicibacterium phage Suzzy | 10875 | 63.531 | Mycolicibacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicibacterium aichiense | Low-quality | Genome-fragment | 20.910 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6 |