INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR495699 | Staphylococcus phage CUB-A | 142581 | 30.249 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR493421 | Klebsiella phage YC1 | 252505 | 44.011 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ATCC 700603 | Complete | High-quality | 100.000 | DTR (high-confidence) | Miamivirus | Miamivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR492660 | Klebsiella phage P1011 | 49460 | 50.410 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B16 | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR492646 | Escherichia phage G4 | 5534 | 46.007 | Escherichia | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Enterobacteria | High-quality | High-quality | 95.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OR492276 | Fusobacterium phage phiKSUM | 111401 | 26.392 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium sp. | Medium-quality | Genome-fragment | 85.090 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_68;antirepressor orf_79 |
| OR492275 | Fusobacterium phage phiHugo | 34681 | 33.347 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium necrophorum | High-quality | High-quality | 98.800 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_31 |
| OR492274 | Fusobacterium phage phiPaco | 43165 | 36.625 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium necrophorum | High-quality | High-quality | 98.260 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_24 |
| OR492273 | Fusobacterium phage phiBB | 36404 | 33.623 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium necrophorum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_44 |
| OR492272 | Fusobacterium phage phiRTG5 | 37037 | 35.043 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium necrophorum subsp. funduliforme RTG5 | Medium-quality | Genome-fragment | 51.370 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_1;integrase orf_55 |
| OR492271 | Fusobacterium phage phiFN37 | 85015 | 29.896 | Fusobacterium | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Fusobacterium necrophorum subsp. necrophorum strain FN37 | Medium-quality | Genome-fragment | 76.060 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_44;antirepressor orf_110;integrase orf_131 |