Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
OR575929phage csAssE-Sib15125638.056UnspecifiedGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OR574845Clostridium phage phiCs5676-14135045.187ClostridiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified [Clostridium] scindens DSM 5676High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_47
OR573959Staphylococcus phage vB_SA_STAP1521759329.404StaphylococcusGroup I RosenblumvirusRosenblumvirusRakietenvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureus 2236-0High-qualityHigh-quality99.420AAI-based (high-confidence) RosenblumvirusRosenblumvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OR567511Enterobacter phage vB_Ent3117288839.833EnterobacterGroup I KaramvirusKaramvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterobacter sp.High-qualityHigh-quality100.000AAI-based (high-confidence) KaramvirusKaramvirus Ent31Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OR565852Citrobacter phage phiNP4493253.156CitrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter rodentium DBS100CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperatecro orf_49;integrase orf_59
OR565851Citrobacter phage Shae_phiSM3675352.151CitrobacterGroup I XuanwuvirusXuanwuvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter rodentium DBS100High-qualityHigh-quality100.000AAI-based (high-confidence) XuanwuvirusXuanwuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_48
OR555718Klebsiella phage EKq14824456.428KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella quasipneumoniae MRSN 829456High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
OR553916Mycobacterium phage Dulcita8003861.578MycobacteriumGroup I BongovirusBongovirusMclasvirinaeVilmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality97.310AAI-based (high-confidence) BongovirusBongovirus bongoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_105
OR553915Gordonia phage Nodigi4720563.341GordoniaGroup I EmalynvirusEmalynvirusCeeteevirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality99.870AAI-based (high-confidence) MargaretvirusMargaretvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
OR553914Microbacterium phage Schimmels223980763.878MicrobacteriumGroup I NeferthenavirusNeferthenavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224High-qualityHigh-quality97.770AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
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