INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
OR594342	Pseudomonas phage vB_PaPhi_Mx1	42679	62.619	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.080	AAI-based (high-confidence)	Phikmvvirus	Phikmvvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR594184	Escherichia phage vB_EcoM_SHAK9454	39471	49.778	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	99.230	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR594183	Escherichia phage vB_EcoM_SHAK7858	44517	50.560	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR594182	Escherichia phage vB_EcoM_SHAK7854	39734	49.771	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	99.880	AAI-based (high-confidence)	Kayfunavirus	Kayfunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR594181	Escherichia phage vB_EcoM_SHAK7704	44446	44.969	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	99.640	AAI-based (high-confidence)	Vectrevirus	Vectrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR594180	Escherichia phage vB_EcoM_SHAK7693	45233	50.521	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR594179	Escherichia phage vB_EcoM_SHAK7163	44656	44.874	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vectrevirus	Vectrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR591532	Klebsiella phage KL01	45854	42.500	Klebsiella	Group I	Reminisvirus	Reminisvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella quasipneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Reminisvirus	Reminisvirus KL01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR589135	Pseudomonas phage UF_RH7	58217	56.435	Pseudomonas	Group I	Newforgelanevirus	Newforgelanevirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.390	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
OR584314	Acinetobacter phage vB_AbaP_B4	40865	39.342	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	98.650	AAI-based (high-confidence)	Friunavirus	Friunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic