INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR683401 | Pseudomonas phage Bise | 38458 | 66.015 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa 199 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_50 |
| OR683400 | Pseudomonas phage Alize | 38819 | 61.890 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa F002 | Medium-quality | Genome-fragment | 76.940 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1 |
| OR677401 | Escherichia phage LQ5 | 171908 | 39.522 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O78 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhakavirus | Dhakavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_184 |
| OR672094 | Aphanizomenon phage Afl-Yong1040-1 | 37464 | 63.901 | Aphanizomenon | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aphanizomenon flos-aquae | High-quality | High-quality | 94.540 | AAI-based (medium-confidence) | temperate | integrase orf_31 | |||
| OR672055 | Proteus phage P2-71 | 58706 | 46.873 | Proteus | Group I | Lavrentievavirus | Lavrentievavirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | Complete | High-quality | 100.000 | DTR (high-confidence) | Lavrentievavirus | Lavrentievavirus E21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR671924 | Roseobacter phage CRP-810 | 57692 | 52.850 | Roseobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Roseobacter sp. (CHUG lineage) | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_15 |
| OR671255 | Yersinia phage AKS2023HT30GU_phi | 38417 | 47.247 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia pestis | High-quality | High-quality | 96.170 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR671254 | Yersinia phage AKS2022HT104GU_phi | 38509 | 47.233 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia pestis | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR671253 | Yersinia phage AKS2022HT100GU_phi | 38651 | 47.111 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia pestis | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR671252 | Yersinia phage AKS2022HT89GU_phi | 38649 | 47.093 | Yersinia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Yersinia pestis | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |