INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR753409 | Enterobacter phage vB_EclS_AS5 | 49578 | 47.864 | Enterobacter | Group I | Henuseptimavirus | Henuseptimavirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae ATCC 13047 | High-quality | High-quality | 98.550 | AAI-based (high-confidence) | Henuseptimavirus | Henuseptimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR752350 | Salmonella phage CX36 | 43107 | 49.595 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica sdc-11 (multidrug-resistant strain) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR734989 | Vibrio phage vB_VpP_1 | 48971 | 42.691 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus ATCC17802 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR733709 | Pseudomonas phage BL3 | 65909 | 55.621 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus E217 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR733708 | Pseudomonas phage BL2 | 65888 | 54.987 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus R26 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR733707 | Pseudomonas phage BL1 | 66169 | 54.986 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Pbunavirus | Pbunavirus Ab28 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR733335 | Shigella phage Sso-yong1 | 39676 | 48.825 | Shigella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.320 | AAI-based (high-confidence) | Berlinvirus | Berlinvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR730450 | Acinetobacter phage HZY2308 | 45720 | 37.896 | Acinetobacter | Group I | Burnvirus | Burnvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Burnvirus | Burnvirus HZY2308 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OR729889 | Salmonella phage vB_SenAc-pSK20 | 158206 | 44.671 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis KCTC 4822 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR729839 | Stenotrophomonas phage StenM_174 | 42956 | 59.945 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia CEMTC 2355 | Complete | High-quality | 100.000 | DTR (high-confidence) | Ponderosavirus | Ponderosavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |