INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OR777152	Arthrobacter phage Cupello	39563	66.949	Arthrobacter	Group I	Kuleanavirus	Kuleanavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. B10-11	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kuleanavirus	Kuleanavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35
OR777151	Arthrobacter phage Marchesin	38789	66.199	Arthrobacter	Group I	Kuleanavirus	Kuleanavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. B10-11	High-quality	High-quality	99.980	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_34
OR776998	Escherichia phage YX22	154890	48.946	Escherichia	Group I	Aglimvirinae	Unclassified	Aglimvirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli APEC IMT5155	High-quality	High-quality	98.030	AAI-based (high-confidence)	Agtrevirus	Agtrevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR771714	Klebsiella phage vB_KpnM_KpVB3	48394	48.847	Klebsiella	Group I	Jedunavirus	Jedunavirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Bimevirus	Bimevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OR770645	Acinetobacter phage Abgy2021-4-1	41242	39.402	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii GY-4	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR770644	Acinetobacter phage Abgy2021-6-2	40889	39.465	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii GY-6	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus MRABP9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR770614	Staphylococcus phage vB_StaM_PB50	273701	24.635	Staphylococcus	Group I	Machiasvirus	Machiasvirus	Wallmarkvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	Complete	High-quality	100.000	DTR (high-confidence)	Machiasvirus	Machiasvirus PB50	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR769032	Escherichia phage JoYop	169193	35.457	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli HER 1036	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR769031	Escherichia phage Carena	39283	48.955	Escherichia	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli HER 1036	High-quality	High-quality	98.340	AAI-based (high-confidence)	Berlinvirus	Berlinvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OR767211	Enterococcus phage EF-M80	40434	34.882	Enterococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium	High-quality	High-quality	99.230	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic