INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR797042 | Stenotrophomonas phage vB_SmaS_Bhz55 | 66040 | 56.404 | Stenotrophomonas | Group I | Siaravirus | Siaravirus | Beaumontvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | Complete | High-quality | 100.000 | DTR (high-confidence) | Salvavirus | Salvavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR797041 | Stenotrophomonas phage vB_SmaS_Bhz54 | 41867 | 62.192 | Stenotrophomonas | Group I | Shangdongvirus | Shangdongvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 98.930 | AAI-based (high-confidence) | Shangdongvirus | Shangdongvirus braunschweig | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR797040 | Stenotrophomonas phage vB_SmaM_Bhz51 | 159540 | 54.060 | Stenotrophomonas | Group I | Menderavirus | Menderavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | Menderavirus | Menderavirus mendera | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR795024 | Aeromonas phage vB_AhydM-H1 | 52614 | 51.758 | Aeromonas | Group I | Longwangvirus | Longwangvirus | Nefertitivirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila A331 | High-quality | High-quality | 98.660 | AAI-based (high-confidence) | Longwangvirus | Longwangvirus h1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR791786 | Escherichia phage Copypasta | 6408 | 40.871 | Escherichia | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Escherichia coli MG1655 F(+) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OR791690 | Escherichia phage vB_EcoM_JL1 | 55571 | 44.102 | Escherichia | Group I | Carltongylesvirus | Carltongylesvirus | Cleopatravirinae | Chaseviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Carltongylesvirus | Carltongylesvirus JL1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR791279 | Acinetobacter phage vB_ApiM_IME-Ap7 | 45048 | 37.873 | Acinetobacter | Group I | Pittiivirus | Pittiivirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter pittii 7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pittiivirus | Pittiivirus IMEAp7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR791114 | Pseudoalteromonas phage vB_PalP_Y7 | 57699 | 45.864 | Pseudoalteromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudoalteromonas sp. Y7 | High-quality | High-quality | 92.950 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR790969 | Pseudomonas phage PfAC02b | 13720 | 53.003 | Pseudomonas | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Pseudomonas aeruginosa 02-5867 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_19 |
| OR790968 | Pseudomonas phage PfAC02a | 13430 | 54.267 | Pseudomonas | Group II | Inoviridae | Unclassified | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Pseudomonas aeruginosa 02-5135 | Medium-quality | Genome-fragment | 83.960 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_19 |