INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR842557 | Escherichia phage 04086 | 177253 | 39.401 | Escherichia | Group I | Dhakavirus | Dhakavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dhakavirus | Dhakavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_273 |
| OR838459 | Stenotrophomonas phage StenR_269 | 66322 | 49.729 | Stenotrophomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas rhizophila CEMTC 4565 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OR836606 | Staphylococcus phage LY01 | 258897 | 25.134 | Staphylococcus | Group I | Madawaskavirus | Madawaskavirus | Wallmarkvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus YZ4 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | Madawaskavirus | Madawaskavirus LY01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR822025 | Enterobacter phage NJ2 | 39605 | 52.640 | Enterobacter | Group I | Yuanmingyuanvirus | Yuanmingyuanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Yuanmingyuanvirus | Yuanmingyuanvirus NJ2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR820950 | Klebsiella phage vB_KpnS-K7 | 49088 | 51.061 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | Webervirus | Webervirus TAH8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR820920 | Bacillus phage vB_BpuM-ZY1 | 37161 | 58.432 | Bacillus | Group I | Peduoviridae | Unclassified | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_49 |
| OR820515 | Ralstonia phage AhaGv | 61785 | 64.687 | Ralstonia | Group I | Gervaisevirus | Gervaisevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum CQPS-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gervaisevirus | Gervaisevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_12;antirepressor orf_28 |
| OR820514 | Xanthomonas phage AhaSv | 55576 | 63.236 | Xanthomonas | Group I | Salvovirus | Salvovirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas campestris pv. campestris str. 8004 | High-quality | High-quality | 99.640 | AAI-based (high-confidence) | Salvovirus | Salvovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OR813930 | Mycobacterium phage WXIN | 115158 | 61.898 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicibacterium septicum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_77 |
| OR813779 | Vibrio phage vB_VpM-pA2SJ1 | 51054 | 43.701 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus KCTC 2471 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_10 |