INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Z47794 | Streptococcus phage Cp1 | 19343 | 38.831 | Streptococcus | Group I | Cepunavirus | Cepunavirus | Unclassified | Madridviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (high-confidence) | Cepunavirus | Cepunavirus Cp1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| Z18946 | Fromanvirus L5 | 52297 | 62.258 | Unspecified | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.520 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus L5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;immunity orf_71 |
| Y13918 | Citexvirus phiCTX | 35559 | 62.617 | Unspecified | Group I | Citexvirus | Citexvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA 158 | High-quality | High-quality | 98.030 | AAI-based (high-confidence) | Citexvirus | Citexvirus phiCTX | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_44 |
| X99260 | Bacillus phage B103 | 18630 | 37.660 | Bacillus | Group I | Beecentumtrevirus | Beecentumtrevirus | Picovirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis 9/3 | High-quality | High-quality | 96.190 | AAI-based (high-confidence) | Beecentumtrevirus | Beecentumtrevirus B103 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| X98106 | Lactobacillus phage phig1e | 42259 | 43.061 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_8 |
| X97918 | Bacillus phage SPP1 | 44010 | 43.715 | Bacillus | Group I | Rivavirus | Rivavirus | Polsinellivirinae | Trautnerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.780 | AAI-based (high-confidence) | Rivavirus | Rivavirus SPP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| X96987 | Bacillus phage GA1 | 21129 | 34.654 | Bacillus | Group I | Gaunavirus | Gaunavirus | Tatarstanvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. G1R | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gaunavirus | Gaunavirus GA1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| X80191 | Pseudomonas phage PP7 | 3588 | 54.208 | Pseudomonas | Group IV | Pepevirus | Pepevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| X60323 | Escherichia phage phiK | 6089 | 44.917 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| X60322 | Escherichia phage alpha3 | 6087 | 45.178 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.970 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |