INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF011378 | Lactococcus phage SK1 | 28451 | 34.512 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.830 | AAI-based (high-confidence) | Skunavirus | Skunavirus sk1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AF020713 | Bacillus phage SPBc2 | 134416 | 34.635 | Bacillus | Group I | Spbetavirus | Spbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Spbetavirus | Spbetavirus SPbeta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;integrase orf_40;antirepressor orf_105 |
| AF059242 | Escherichia phage Qbeta | 4215 | 48.541 | Escherichia | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF059243 | Enterobacteria phage NL95 | 4248 | 50.824 | Enterobacteria | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AF063097 | Bacteriophage P2 | 33593 | 50.168 | Unspecified | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peduovirus | Peduovirus P2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31 |
| AF064539 | Escherichia phage N15 | 46375 | 51.172 | Escherichia | Group I | Ravinvirus | Ravinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ravinvirus | Ravinvirus N15 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_27 |
| AF065411 | Methanobacterium phage psiM2 | 26111 | 46.306 | Methanobacterium | Group I | Psimunavirus | Psimunavirus | Unclassified | Leisingerviridae | Methanobavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Methanobacterium thermoautotrophicum Marburg | High-quality | High-quality | 93.300 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_36 |
| AF068845 | Mycobacterium phage TM4 | 52797 | 68.114 | Mycobacterium | Group I | Timquatrovirus | Timquatrovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.580 | AAI-based (high-confidence) | Timquatrovirus | Timquatrovirus TM4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_40 |
| AF069308 | Escherichia phage HK022 | 40751 | 49.483 | Escherichia | Group I | Shamshuipovirus | Shamshuipovirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Shamshuipovirus | Shamshuipovirus HK022 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27 |
| AF069529 | Escherichia phage HK97 | 39732 | 49.786 | Escherichia | Group I | Byrnievirus | Byrnievirus | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | Byrnievirus | Byrnievirus HK97 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_38;antirepressor orf_39 |