INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ398052 | Mycobacterium phage Wildcat | 78296 | 56.852 | Mycobacterium | Group I | Wildcatvirus | Wildcatvirus | Unclassified | Vilmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.690 | AAI-based (high-confidence) | Wildcatvirus | Wildcatvirus wildcat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ398053 | Mycobacterium phage Catera | 153766 | 64.735 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 96.380 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus quasimodo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ426904 | Mannheimia phage PHL101 | 34525 | 41.567 | Mannheimia | Group I | Baylorvirus | Baylorvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica biovar 1 serotype A1; ST1 | High-quality | High-quality | 96.550 | AAI-based (high-confidence) | Baylorvirus | Baylorvirus PHL101 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_34;cro orf_35;integrase orf_49 |
| DQ426905 | Mannheimia phage phiMhaA1-BAA410 | 34600 | 41.581 | Mannheimia | Group I | Baylorvirus | Baylorvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica strain ATCC BAA-410 serotype A1; ST1 | High-quality | High-quality | 96.760 | AAI-based (high-confidence) | Baylorvirus | Baylorvirus PHL101 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_34;cro orf_35;integrase orf_49 |
| DQ431235 | Propionibacterium phage PA6 | 29739 | 54.023 | Propionibacterium | Group I | Pahexavirus | Pahexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pahexavirus | Pahexavirus PA6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ453159 | Geobacillus virus E2 | 40863 | 44.786 | Geobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Geobacillus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_28 |
| DQ466086 | Clostridioides phage phiC2 | 56538 | 28.726 | Clostridioides | Group I | Yongloolinvirus | Yongloolinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Yongloolinvirus | Yongloolinvirus C2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_5;integrase orf_51;antirepressor orf_57 |
| DQ490056 | Lactococcus phage Q54 | 26537 | 37.099 | Lactococcus | Group I | Questintvirus | Questintvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis SMQ-562 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Questintvirus | Questintvirus Q54 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ499600 | Corynebacterium phage P1201 | 70579 | 50.919 | Corynebacterium | Group I | Chunghsingvirus | Chunghsingvirus | Toshachvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chunghsingvirus | Chunghsingvirus P1201 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_6 |
| DQ500118 | Rhizobium phage 16-3 | 60195 | 58.952 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |