INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG727698 | Paenibacillus phage PBL1c | 40611 | 41.247 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus PBL1c | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_30;antirepressor orf_34;antirepressor orf_38;integrase orf_63 |
| MG727699 | Paenibacillus phage Pagassa | 40035 | 42.001 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Fernvirus | Fernvirus pagassa | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_35;antirepressor orf_40 |
| MG727700 | Paenibacillus phage Tadhana | 37880 | 42.112 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 94.510 | AAI-based (high-confidence) | Fernvirus | Fernvirus tadhana | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28;antirepressor orf_33;antirepressor orf_37 |
| MG727701 | Paenibacillus phage Leyra | 42276 | 41.395 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fernvirus | Fernvirus leyra | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_29;integrase orf_30;antirepressor orf_33;antirepressor orf_35;antirepressor orf_39;integrase orf_58 |
| MG727702 | Paenibacillus phage Likha | 39778 | 41.302 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | Fernvirus | Fernvirus likha | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27;antirepressor orf_31;antirepressor orf_35;integrase orf_54 |
| MG732930 | Enterobacter phage Ec_L1 | 51894 | 48.241 | Enterobacter | Group I | Eclunavirus | Eclunavirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter cloacae | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Eclunavirus | Eclunavirus EcL1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG736918 | Erwinia phage vB_EamP-S2 | 45495 | 49.792 | Erwinia | Group I | Eracentumvirus | Eracentumvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora CFBP 1430 | Complete | High-quality | 100.000 | DTR (high-confidence) | Eracentumvirus | Eracentumvirus S2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG744354 | Lactobacillus phage Satyr | 81076 | 39.417 | Lactobacillus | Group I | Maenadvirus | Maenadvirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Maenadvirus | Maenadvirus satyr | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_83;antirepressor orf_117 |
| MG746602 | Klebsiella phage vB_Kpn_F48 | 170764 | 40.783 | Klebsiella | Group I | Marfavirus | Marfavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST101 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Marfavirus | Marfavirus F48 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG747435 | Ralstonia phage RsoM1USA | 39309 | 65.153 | Ralstonia | Group I | Aresaunavirus | Aresaunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Aresaunavirus | Aresaunavirus RsoM1USA | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_53 |