Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MG708274Streptococcus phage vB_SthS_VA2143825338.230StreptococcusGroup I MoineauvirusMoineauvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus thermophilus VA214High-qualityHigh-quality100.000AAI-based (high-confidence) MoineauvirusMoineauvirus VA214Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_18;antirepressor orf_19
MG708275Streptococcus phage vB_SthS_VA4604116938.755StreptococcusGroup I MoineauvirusMoineauvirusUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus thermophilus VA460High-qualityHigh-quality100.000AAI-based (high-confidence) MoineauvirusMoineauvirus VA460Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MG708276Enterococcus phage PMBT24148934.691EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis FAIR-E238High-qualityHigh-quality100.000AAI-based (high-confidence) EfquatrovirusEfquatrovirus PMBT2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MG710484Bacillus phage BtiUFT6.51-F4207635.334BacillusGroup I CamtrevirusCamtrevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus thuringiensis israelensisHigh-qualityHigh-quality100.000AAI-based (high-confidence) CamtrevirusCamtrevirus BtCS33The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_16;integrase orf_28;antirepressor orf_37;integrase orf_53
MG710528Escherichia phage GER28811449.243EscherichiaGroup I OslovirusOslovirusSepvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O117:H7 strain 23169High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_38;cro orf_41;cro orf_42
MG711460Faecalibacterium phage FP_Mushu3663660.310FaecalibacteriumGroup I MushuvirusMushuvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Faecalibacterium prausnitziiHigh-qualityHigh-quality100.000AAI-based (medium-confidence) MushuvirusMushuvirus mushuCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_10
MG711461Faecalibacterium phage FP_Lagaffe4821155.906FaecalibacteriumGroup I LagaffevirusLagaffevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Faecalibacterium prausnitziiHigh-qualityHigh-quality100.000AAI-based (high-confidence) LagaffevirusLagaffevirus lagaffeCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_37
MG711462Faecalibacterium phage FP_Epona4957357.092FaecalibacteriumGroup I EponavirusEponavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Faecalibacterium prausnitziiHigh-qualityHigh-quality97.570AAI-based (high-confidence) EponavirusEponavirus eponaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
MG711463Faecalibacterium phage FP_oengus5839149.794FaecalibacteriumGroup I OengusvirusOengusvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Faecalibacterium prausnitziiCompleteHigh-quality100.000DTR (high-confidence) OengusvirusOengusvirus oengusCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
MG711464Faecalibacterium phage FP_Lugh3407559.894FaecalibacteriumGroup I LughvirusLughvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Faecalibacterium prausnitziiHigh-qualityHigh-quality98.750AAI-based (high-confidence) LughvirusLughvirus lughCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
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