INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG708274 | Streptococcus phage vB_SthS_VA214 | 38253 | 38.230 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus VA214 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus VA214 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_18;antirepressor orf_19 |
| MG708275 | Streptococcus phage vB_SthS_VA460 | 41169 | 38.755 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus VA460 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus VA460 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG708276 | Enterococcus phage PMBT2 | 41489 | 34.691 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis FAIR-E238 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus PMBT2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG710484 | Bacillus phage BtiUFT6.51-F | 42076 | 35.334 | Bacillus | Group I | Camtrevirus | Camtrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis israelensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Camtrevirus | Camtrevirus BtCS33 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_16;integrase orf_28;antirepressor orf_37;integrase orf_53 |
| MG710528 | Escherichia phage GER2 | 88114 | 49.243 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O117:H7 strain 23169 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_38;cro orf_41;cro orf_42 |
| MG711460 | Faecalibacterium phage FP_Mushu | 36636 | 60.310 | Faecalibacterium | Group I | Mushuvirus | Mushuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Faecalibacterium prausnitzii | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Mushuvirus | Mushuvirus mushu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10 |
| MG711461 | Faecalibacterium phage FP_Lagaffe | 48211 | 55.906 | Faecalibacterium | Group I | Lagaffevirus | Lagaffevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Faecalibacterium prausnitzii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lagaffevirus | Lagaffevirus lagaffe | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_37 |
| MG711462 | Faecalibacterium phage FP_Epona | 49573 | 57.092 | Faecalibacterium | Group I | Eponavirus | Eponavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Faecalibacterium prausnitzii | High-quality | High-quality | 97.570 | AAI-based (high-confidence) | Eponavirus | Eponavirus epona | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| MG711463 | Faecalibacterium phage FP_oengus | 58391 | 49.794 | Faecalibacterium | Group I | Oengusvirus | Oengusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Faecalibacterium prausnitzii | Complete | High-quality | 100.000 | DTR (high-confidence) | Oengusvirus | Oengusvirus oengus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| MG711464 | Faecalibacterium phage FP_Lugh | 34075 | 59.894 | Faecalibacterium | Group I | Lughvirus | Lughvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Faecalibacterium prausnitzii | High-quality | High-quality | 98.750 | AAI-based (high-confidence) | Lughvirus | Lughvirus lugh | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |