INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CP053388 | Escherichia phage CMS-2020a | 107648 | 46.420 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli strain SCU-107 | High-quality | High-quality | 98.760 | AAI-based (high-confidence) | Cyranovirus | Cyranovirus CMS2020b | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| CP054387 | Escherichia phage CMS-2020a | 109272 | 45.309 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli strain SCU-175 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cyranovirus | Cyranovirus CMS2020a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| CP058330 | Klebsiella phage vB_Kpn_1825-KPC53 | 119621 | 50.285 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. pneumoniae LC-1825/18 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Westmeadvirus | Westmeadvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_123;integrase orf_125 |
| CP058906 | Micromonospora phage pMLP1 | 43352 | 71.515 | Micromonospora | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Micromonospora carbonacea str. Africana | Medium-quality | Genome-fragment | 86.650 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_71 |
| CP059058 | Proteus phage ASh-2020a | 59078 | 46.720 | Proteus | Group I | Lavrentievavirus | Lavrentievavirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis CriePir89 | High-quality | High-quality | 99.180 | AAI-based (high-confidence) | Lavrentievavirus | Lavrentievavirus PM87 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| CP060690 | Liberibacter phage P-Myan16-2 | 36303 | 39.382 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus Myan16 | High-quality | High-quality | 93.290 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CP062422 | Staphylococcus phage ECel-2020l | 43478 | 34.560 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NAS_OP_087 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;antirepressor orf_37;integrase orf_66 |
| CP062426 | Staphylococcus phage ECel-2020k | 41529 | 33.704 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NAS_OP_042 | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_21;cro orf_24;antirepressor orf_26;antirepressor orf_29;integrase orf_59 |
| CP062427 | Staphylococcus phage ECel-2020j | 43078 | 33.931 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NAS_OP_035 | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_22;antirepressor orf_50;cro orf_51;cro orf_52;integrase orf_55 |
| CP062430 | Staphylococcus phage ECel-2020i | 44872 | 32.722 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NAS_OP_007 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;cro orf_33;antirepressor orf_37;integrase orf_62 |