INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF668279 | Arthrobacter phage Nellie | 45428 | 45.752 | Arthrobacter | Group I | Jasminevirus | Jasminevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | Complete | High-quality | 100.000 | DTR (high-confidence) | Jasminevirus | Jasminevirus adat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF668280 | Mycobacterium phage Phabba | 164254 | 65.209 | Mycobacterium | Group I | Myrnavirus | Myrnavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Myrnavirus | Myrnavirus phabba | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_145 |
| MF668281 | Mycobacterium phage RitaG | 57789 | 61.603 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus ritaG | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38;immunity orf_40 |
| MF668282 | Gordonia phage ShayRa | 51238 | 62.052 | Gordonia | Group I | Soupsvirus | Soupsvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 96.830 | AAI-based (high-confidence) | Soupsvirus | Soupsvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_31 |
| MF668283 | Mycobacterium phage Smairt | 54655 | 63.555 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_35;immunity orf_71 |
| MF668284 | Mycobacterium phage Squint | 110240 | 60.953 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.180 | AAI-based (high-confidence) | Omegavirus | Omegavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_84;immunity orf_182 |
| MF668285 | Arthrobacter phage Temper16 | 43950 | 61.859 | Arthrobacter | Group I | Korravirus | Korravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Korravirus | Korravirus sergei | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF668286 | Rhodococcus phage Trina | 139262 | 44.724 | Rhodococcus | Group I | Trinavirus | Trinavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | Complete | High-quality | 100.000 | DTR (high-confidence) | Trinavirus | Trinavirus trina | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF668287 | Mycobacterium phage Wachhund | 54513 | 61.681 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 94.640 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus wachhund | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42;antirepressor orf_44 |
| MF668288 | Mycobacterium phage Wiks | 52122 | 61.521 | Mycobacterium | Group I | Gladiatorvirus | Gladiatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | Gladiatorvirus | Gladiatorvirus zaka | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | parA orf_31;immunity orf_69 |