INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF580960 | Salinibacter phage M31CC-1 | 53808 | 52.994 | Salinibacter | Group I | Kryptosalinivirus | Kryptosalinivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salinibacter ruber M31 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kryptosalinivirus | Kryptosalinivirus M8CC19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_4;integrase orf_12 |
| MF580961 | Salinibacter phage M31CR41-2 | 51889 | 59.658 | Salinibacter | Group I | Kairosalinivirus | Kairosalinivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salinibacter ruber M31 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kairosalinivirus | Kairosalinivirus M31CR412 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF580962 | Salinibacter virus M31CR41-3 | 50128 | 59.743 | Salinibacter | Group I | Kairosalinivirus | Kairosalinivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salinibacter ruber M31 | High-quality | High-quality | 93.150 | AAI-based (high-confidence) | Kairosalinivirus | Kairosalinivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF595878 | Caldibacillus phage CBP1 | 37316 | 41.867 | Caldibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caldibacillus debilis GB1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_9;integrase orf_64 |
| MF612071 | Klebsiella phage AltoGao | 43012 | 53.292 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 51503 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus altogao | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF612072 | Klebsiella phage MezzoGao | 49807 | 50.977 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 51503 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus mezzogao | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF612073 | Klebsiella phage SopranoGao | 61644 | 57.266 | Klebsiella | Group I | Lastavirus | Lastavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae 51503 | High-quality | High-quality | 99.690 | AAI-based (high-confidence) | Lastavirus | Lastavirus sopranogao | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_76 |
| MF614100 | Klebsiella phage vB_KpnS_IME279 | 42518 | 59.307 | Klebsiella | Group I | Sortsnevirus | Sortsnevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Sortsnevirus | Sortsnevirus IME279 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MF614627 | Sinorhizobium phage phi2LM21 | 46600 | 60.648 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium sp. LM21 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_16 |
| MF614628 | Sinorhizobium phage phi3LM21 | 41448 | 61.236 | Sinorhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sinorhizobium sp. LM21 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_30 |