INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF189175	Arthrobacter phage Tribby	59084	45.225	Arthrobacter	Group I	Mudcatvirus	Mudcatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mudcatvirus	Mudcatvirus tribby	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189176	Arthrobacter phage Jordan	51347	61.057	Arthrobacter	Group I	Marthavirus	Marthavirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Marthavirus	Marthavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189177	Arthrobacter phage Piccoletto	49808	63.556	Arthrobacter	Group I	Jawnskivirus	Jawnskivirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	98.950	AAI-based (high-confidence)	Jawnskivirus	Jawnskivirus piccoletto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189178	Arthrobacter phage Shade	50930	61.082	Arthrobacter	Group I	Marthavirus	Marthavirus	Unclassified	Berryhillviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Marthavirus	Marthavirus shade	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF189179	Rhodococcus phage Yoncess	46353	58.799	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	98.500	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_51
MF190168	Mycobacterium phage Spoonbill	55735	61.303	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.780	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus spoonbill	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43
MF197383	Corynebacterium phage Poushou	40353	60.008	Corynebacterium	Group I	Poushouvirus	Poushouvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Corynebacterium vitaeruminis CAG1, a derivative of (NCIB9291)	High-quality	High-quality	99.570	AAI-based (high-confidence)	Poushouvirus	Poushouvirus Poushou	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32
MF276773	Erwinia phage EtG	30413	54.138	Erwinia	Group I	Eganvirus	Eganvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia tracheiphila	High-quality	High-quality	97.530	AAI-based (high-confidence)	Eganvirus	Eganvirus EtG	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;cro orf_32;integrase orf_41
MF278336	Alteromonas phage vB_AspP-H4/4	47631	40.761	Alteromonas	Group I	Foturvirus	Foturvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Alteromonas sp. H4	High-quality	High-quality	98.890	AAI-based (high-confidence)	Foturvirus	Foturvirus H44	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF281061	Mycobacterium phage Ksquared	48699	67.094	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.390	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus ksquared	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_31;antirepressor orf_34