INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MF140416	Mycobacterium phage LastHope	60934	66.876	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.630	AAI-based (high-confidence)	Anayavirus	Anayavirus lasthope	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_44
MF140417	Arthrobacter phage Link	15521	60.177	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.470	AAI-based (high-confidence)	Decurrovirus	Decurrovirus decurro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF140418	Arthrobacter phage LiSara	60137	64.745	Arthrobacter	Group I	Laroyevirus	Laroyevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Laroyevirus	Laroyevirus lisara	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF140419	Arthrobacter phage Lore	15556	59.643	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.700	AAI-based (high-confidence)	Decurrovirus	Decurrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF140420	Arthrobacter phage Mariposa	15556	60.112	Arthrobacter	Group I	Decurrovirus	Decurrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.700	AAI-based (high-confidence)	Decurrovirus	Decurrovirus decurro	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF140421	Mycobacterium phage Nicholas	70413	59.184	Mycobacterium	Group I	Lumosvirus	Lumosvirus	Lclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	93.070	AAI-based (high-confidence)	Lumosvirus	Lumosvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_35;immunity orf_37
MF140422	Mycobacterium phage Nicholasp3	75822	58.876	Mycobacterium	Group I	Faithunavirus	Faithunavirus	Lclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Faithunavirus	Faithunavirus faith1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_39;immunity orf_41;cro orf_42
MF140423	Arthrobacter phage Nightmare	58839	49.855	Arthrobacter	Group I	Gordonvirus	Gordonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gordonvirus	Gordonvirus nightmare	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_9
MF140424	Arthrobacter phage Nubia	44045	60.695	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Korravirus	Korravirus nubia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MF140425	Arthrobacter phage PitaDog	42963	60.699	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	98.280	AAI-based (high-confidence)	Korravirus	Korravirus drrobert	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic