Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MF133446Mycobacterium phage Bogie4863966.887MycobacteriumGroup I FishburnevirusFishburnevirusPclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.990AAI-based (high-confidence) FishburnevirusFishburnevirus shipwreckCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_33;immunity orf_34;antirepressor orf_37
MF140397Arthrobacter phage Abidatro3912268.545ArthrobacterGroup I GalaxyvirusGalaxyvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022High-qualityHigh-quality100.000AAI-based (high-confidence) GalaxyvirusGalaxyvirus abidatroCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_33
MF140398Mycobacterium phage Amohnition6176167.246MycobacteriumGroup I AmginevirusAmginevirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) AmginevirusAmginevirus amohnitionThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_40;immunity orf_43;cro orf_44
MF140399Mycobacterium phage Bartholomew4648467.189MycobacteriumGroup I FishburnevirusFishburnevirusPclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality94.860AAI-based (high-confidence) FishburnevirusFishburnevirus bartholomewCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_30;immunity orf_31;antirepressor orf_34
MF140400Arthrobacter phage Canowicakte4391461.220ArthrobacterGroup I KorravirusKorravirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022High-qualityHigh-quality100.000AAI-based (high-confidence) KorravirusKorravirus wayneCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MF140401Arthrobacter phage Caterpillar5662251.060ArthrobacterGroup I GordonvirusGordonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022High-qualityHigh-quality98.010AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
MF140402Mycobacterium phage Chancellor5769767.972MycobacteriumGroup I FionnbharthvirusFionnbharthvirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FionnbharthvirusFionnbharthvirus fionnbharthCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_44;immunity orf_46;cro orf_47
MF140403Mycobacterium phage Changeling5299164.588MycobacteriumGroup I FromanvirusFromanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateparA orf_35;immunity orf_70
MF140404Arthrobacter phage Christian4308160.707ArthrobacterGroup I KorravirusKorravirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022High-qualityHigh-quality98.540AAI-based (high-confidence) KorravirusKorravirus drrobertCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MF140405Mycobacterium phage Clautastrophe7205559.191MycobacteriumGroup I LumosvirusLumosvirusLclasvirinaeVilmaviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality94.800AAI-based (high-confidence) LumosvirusLumosvirus lumosCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_35;immunity orf_37
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