INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MF033350 | Acinetobacter phage vB_ApiP_P1 | 41208 | 39.196 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter pittii | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Friunavirus | Friunavirus P1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF033351 | Acinetobacter phage vB_ApiP_P2 | 41514 | 39.334 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter pittii | Complete | High-quality | 100.000 | DTR (high-confidence) | Friunavirus | Friunavirus P2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF034659 | Pasteurella phage vB_PmuP_PHB02 | 38670 | 40.846 | Pasteurella | Group I | Wuhanvirus | Wuhanvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pasteurella multocida | Complete | High-quality | 100.000 | DTR (high-confidence) | Wuhanvirus | Wuhanvirus PHB02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF036690 | Serratia phage CHI14 | 171175 | 38.735 | Serratia | Group I | Winklervirus | Winklervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. ATCC 39006 | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | Winklervirus | Winklervirus chi14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF036691 | Serratia phage CBH8 | 171175 | 38.736 | Serratia | Group I | Winklervirus | Winklervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. ATCC 39006 | High-quality | High-quality | 98.910 | AAI-based (high-confidence) | Winklervirus | Winklervirus chi14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF036692 | Serratia phage X20 | 172450 | 38.655 | Serratia | Group I | Winklervirus | Winklervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia sp. ATCC 39006 | High-quality | High-quality | 98.770 | AAI-based (high-confidence) | Winklervirus | Winklervirus xtwenty | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MF038790 | Arthrobacter phage Niktson | 58405 | 49.912 | Arthrobacter | Group I | Gordonvirus | Gordonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gordonvirus | Gordonvirus niktson | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_8 |
| MF038791 | Arthrobacter phage ElephantMan | 58405 | 49.912 | Arthrobacter | Group I | Gordonvirus | Gordonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gordonvirus | Gordonvirus niktson | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_8 |
| MF041990 | Lactobacillus phage phiEF-1.1 | 39130 | 39.438 | Lactobacillus | Group I | Aliceevansviridae | Unclassified | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus murinus EF-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_7 |
| MF042360 | Pseudomonas phage Phabio | 309157 | 42.998 | Pseudomonas | Group I | Phabiovirus | Phabiovirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas fluorescens SBW25 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phabiovirus | Phabiovirus phabio | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |