INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
LR588166	Pseudomonas phage vB_PaeM_MIJ3	288170	33.349	Pseudomonas	Group I	Wroclawvirus	Wroclawvirus	Unclassified	Arenbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Wroclawvirus	Wroclawvirus PA5oct	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
LR595850	Escherichia phage 1H12	46703	50.027	Escherichia	Group I	Jouyvirus	Jouyvirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.940	AAI-based (high-confidence)	Jouyvirus	Jouyvirus jv1H12	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32;cro orf_48;cro orf_49
LR595859	Escherichia phage 2B8	48763	50.188	Escherichia	Group I	Alegriavirus	Alegriavirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Alegriavirus	Alegriavirus av2B8	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31;cro orf_46;cro orf_47
LR595860	Escherichia virus Lambda_2E9	46702	50.026	Escherichia	Group I	Jouyvirus	Jouyvirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.940	AAI-based (high-confidence)	Jouyvirus	Jouyvirus jv1H12	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31;cro orf_47;cro orf_48
LR595861	Escherichia virus Lambda_4C10	49207	49.769	Escherichia	Group I	Bievrevirus	Bievrevirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bievrevirus	Bievrevirus bv4A7	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32;cro orf_45
LR595862	Escherichia phage 2H10	46288	50.326	Escherichia	Group I	Glaedevirus	Glaedevirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.580	AAI-based (high-confidence)	Glaedevirus	Glaedevirus gv2H10	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_28;cro orf_36
LR595863	Escherichia virus Lambda_4B5	48141	50.130	Escherichia	Group I	Jouyvirus	Jouyvirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jouyvirus	Jouyvirus jv1H12	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32;cro orf_48;cro orf_49
LR595864	Escherichia phage 4A7	49168	49.770	Escherichia	Group I	Bievrevirus	Bievrevirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bievrevirus	Bievrevirus bv4A7	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32;cro orf_45
LR595865	Escherichia virus Lambda_2G7a	46701	50.027	Escherichia	Group I	Jouyvirus	Jouyvirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.930	AAI-based (high-confidence)	Jouyvirus	Jouyvirus jv1H12	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31;cro orf_47;cro orf_48
LR595866	Escherichia phage 2G7b	47142	49.879	Escherichia	Group I	Nesevirus	Nesevirus	Jacobvirinae	Zimmerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.200	AAI-based (high-confidence)	Nesevirus	Nesevirus nv2G7b	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;cro orf_48;cro orf_49