Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
LN610582Pseudomonas phage vB_PaeM_PAO1_Ab068475954.598PseudomonasGroup I NankokuvirusNankokuvirusUnclassifiedVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaCompleteHigh-quality100.000DTR (high-confidence) NankokuvirusNankokuvirus Ab03Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610583Pseudomonas phage vB_PaeM_PAO1_Ab118578354.525PseudomonasGroup I NankokuvirusNankokuvirusUnclassifiedVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaCompleteHigh-quality100.000DTR (high-confidence) NankokuvirusNankokuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610584Pseudomonas phage vB_PaeS_PAO1_Ab195813963.303PseudomonasGroup I AbidjanvirusAbidjanvirusBradleyvirinaeMesyanzhinovviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality95.440AAI-based (high-confidence) AbidjanvirusAbidjanvirus Ab19Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610585Pseudomonas phage vB_PaeS_PAO1_Ab205774563.476PseudomonasGroup I AbidjanvirusAbidjanvirusBradleyvirinaeMesyanzhinovviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality94.590AAI-based (high-confidence) AbidjanvirusAbidjanvirus Ab18Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610586Pseudomonas phage vB_PaeM_C2-10_Ab109305349.252PseudomonasGroup I PakpunavirusPakpunavirusSkurskavirinaeVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaCompleteHigh-quality100.000DTR (high-confidence) PakpunavirusPakpunavirus CAb1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610587Pseudomonas phage vB_PaeM_C2-10_Ab159330849.346PseudomonasGroup I PakpunavirusPakpunavirusSkurskavirinaeVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaCompleteHigh-quality100.000DTR (high-confidence) PakpunavirusPakpunavirus CAb02Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610588Pseudomonas phage vB_PaeM_PAO1_Ab296632655.640PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus E217Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610589Pseudomonas phage vB_PaeM_C1-14_Ab286618154.902PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus Ab28Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LN610590Pseudomonas phage vB_PaeS_PAO1_Ab303723864.080PseudomonasGroup I CasadabanvirusCasadabanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality97.920AAI-based (high-confidence) CasadabanvirusCasadabanvirus Ab30Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_1;integrase orf_6
LN681534Clostridium phage phiCD24-14412928.503ClostridiumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Clostridium difficileHigh-qualityHigh-quality99.010AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_37;cro orf_41;antirepressor orf_42
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