Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
LC788711Escherichia coli phage NG_S810845940.046EscherichiaGroup I EpseptimavirusEpseptimavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedCompleteHigh-quality100.000DTR (high-confidence) EpseptimavirusEpseptimavirus ev329The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
LC799501Morganella phage MopsHU13906151.174MorganellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Morganella psychrotolerans Mps.8CompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
LC801235Pseudomonas phage PP214920444.880PseudomonasGroup I PaundecimvirusPaundecimvirusUnclassifiedZobellviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaCompleteHigh-quality100.000DTR (high-confidence) PaundecimvirusPaundecimvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC811684Vibrio phage VF1612183839.740VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio parahaemolyticus NBRC 12711CompleteHigh-quality100.000DTR (high-confidence) VipunavirusVipunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
LC813552Helicobacter phage KHP30T2824235.539HelicobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Helicobacter pylori NY43High-qualityHigh-quality98.440AAI-based (high-confidence) SchmidvirusSchmidvirus KHP30Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2;cro orf_18
LC816585Helicobacter phage KHP402641235.934HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality92.040AAI-based (high-confidence) SchmidvirusSchmidvirus KHP40Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3
LC819005Ralstonia phage FLC1-1B29000856.002RalstoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Ralstonia pseudosolanacearumHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
LC819006Ralstonia phage FLC4-11C22560052.044RalstoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Ralstonia pseudosolanacearumHigh-qualityHigh-quality100.000AAI-based (high-confidence) ChiangmaivirusChiangmaivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
LC819007Ralstonia phage FLC4-3B29125755.947RalstoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Ralstonia pseudosolanacearumHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
LC819008Ralstonia phage FLC4-4C22507152.060RalstoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Ralstonia pseudosolanacearumHigh-qualityHigh-quality100.000AAI-based (high-confidence) ChiangmaivirusChiangmaivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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