INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
LC727698	Pseudomonas phage sp. 30-3	284544	33.187	Pseudomonas	Group I	Wroclawvirus	Wroclawvirus	Unclassified	Arenbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.080	AAI-based (high-confidence)	Wroclawvirus	Wroclawvirus PA5oct	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
LC727699	Pseudomonas phage sp. LC	281088	36.892	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
LC727700	Pseudomonas phage sp. LP	42855	62.301	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.500	AAI-based (high-confidence)	Phikmvvirus	Phikmvvirus MPK7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
LC727701	Pseudomonas phage sp. NK1	278676	36.831	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.410	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
LC727870	Stx2a-converting phage Stx2a_EH0430	53854	50.754	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Medium-quality	Genome-fragment	81.350	AAI-based (medium-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;antirepressor orf_9;antirepressor orf_14;cro orf_32;cro orf_33;antirepressor orf_48
LC727871	Stx2a-converting phage Stx2a_EH0474	55120	50.711	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Medium-quality	Genome-fragment	82.750	AAI-based (medium-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;antirepressor orf_9;antirepressor orf_14;cro orf_33;cro orf_34;antirepressor orf_49
LC727872	Stx2a-converting phage Stx2a_EH1535	55960	50.574	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Medium-quality	Genome-fragment	84.280	AAI-based (medium-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;antirepressor orf_9;antirepressor orf_14;cro orf_31;cro orf_32;antirepressor orf_47;integrase orf_76
LC727876	Stx2c-converting phage Stx2c_PV98-693	50414	51.515	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.270	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;cro orf_9
LC727877	Stx2c-converting phage Stx2c_JNE090279	49924	51.464	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	96.320	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;cro orf_9
LC727878	Stx2c-converting phage Stx2c_JNE072859	50413	51.522	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.270	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_2;cro orf_9