INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC645449 | Stx2a-converting phage Stx2_EC3734 | 62983 | 50.275 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.440 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_27;cro orf_30;cro orf_31;antirepressor orf_46;antirepressor orf_49 |
| LC645450 | Escherichia phage PPwrbA_EC3734 | 62966 | 50.573 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;antirepressor orf_10;antirepressor orf_27;cro orf_30;cro orf_31;antirepressor orf_45 |
| LC645451 | Stx2a-converting phage Stx2_IB14005 | 63073 | 50.132 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.580 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC647030 | Staphylococcus phage vB_SsapH-Golestan-100 | 136433 | 33.748 | Staphylococcus | Group I | Twortvirinae | Unclassified | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus Saprophyticus 100 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LC648442 | Staphylococcus phage vB_SsapH-Golestan-105-M | 142192 | 30.579 | Staphylococcus | Group I | Twortvirinae | Unclassified | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus saprophyticus 105 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC648443 | Pseudomonas phage vB_PaS-HSN4 | 44534 | 53.458 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.270 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC667450 | Burkholderia phage FLC8 | 225545 | 52.051 | Burkholderia | Group I | Chiangmaivirus | Chiangmaivirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia glumae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chiangmaivirus | Chiangmaivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC667451 | Burkholderia phage FLC9 | 321833 | 55.966 | Burkholderia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia glumae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_300 |
| LC667452 | Burkholderia phage FLC10 | 32867 | 61.286 | Burkholderia | Group I | Kisquattuordecimvirus | Kisquattuordecimvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia glumae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kisquattuordecimvirus | Kisquattuordecimvirus FLC10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC680884 | Bacillus phage PBS1 | 252136 | 27.707 | Bacillus | Group I | Takahashivirus | Takahashivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Takahashivirus | Takahashivirus PBS1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_283 |