INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC645419 | Stx2a-converting phage Stx2_112716 | 62974 | 50.210 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.460 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_48;antirepressor orf_51 |
| LC645420 | Stx2a-converting phage Stx2_120517 | 64328 | 50.249 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.500 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645421 | Stx2a-converting phage Stx2_09E126 | 64344 | 50.249 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.520 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645422 | Stx2a-converting phage Stx2_12E070 | 64332 | 50.249 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.500 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645423 | Stx2a-converting phage Stx2_PV11-35 | 63014 | 50.171 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.510 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_47;antirepressor orf_50 |
| LC645424 | Stx2a-converting phage Stx2_12E109 | 63021 | 50.179 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.520 | AAI-based (high-confidence) | Oslovirus | Oslovirus Lyz12581Vzw | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_8;antirepressor orf_9;antirepressor orf_26;antirepressor orf_48;antirepressor orf_51 |
| LC645425 | Stx1a-converting phage Stx1_121427 | 57335 | 50.531 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_6;cro orf_18;cro orf_19;antirepressor orf_67 |
| LC645426 | Stx2c-converting phage Stx2_5044 | 61198 | 51.044 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_6;cro orf_30;antirepressor orf_31;antirepressor orf_76 |
| LC645427 | Escherichia phage PPwrbA_EH2201 | 61247 | 50.368 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 90.800 | AAI-based (high-confidence) | Oslovirus | Oslovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;antirepressor orf_10;antirepressor orf_27;cro orf_30;cro orf_31;antirepressor orf_45 |
| LC645428 | Stx1a-converting phage Stx1_9793 | 52371 | 51.317 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.440 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;antirepressor orf_39 |